Genome sequences
Kumamushi (Ramazzottius varieornatus strain YOKOZUNA-1) genome sequences are deposited to the DNA Data Bank of Japan (DDBJ) which can be retrieved by the getenntry service or through GenBank or ENA under the international nucleotide sequence database collaboration (INSDC).
- Scaffolds BDGG01000001 .. BDGG01000199 (199 entries)
- Mitochondrion AP017609
FASTA files
- Chromosome sequences Scaffolds, Mitochondrion
- Gene models Protein sequences, DNA sequences, GTF
Relevant BioSample ID is SAMD00054187 and BioProject ID is PRJDB4588.
Dsup gene
Amino acid and nucleic acid sequences of the Dsup gene described in our paper "Extremotolerant tardigrade genome and improved radiotolerance of human cultured cells by tardigrade-unique protein" Nat Commun. 7:12808 are as follows:
Protein sequence
>RvY_17224.p1 Damage Suppressor (Dsup)|S261 [ZN09419 ZM11418.1] MASTHQSSTEPSSTGKSEETKKDASQGSGQDSKNVTVTKGTGSSATSAAIVKTGGSQGKD SSTTAGSSSTQGQKFSTTPTDPKTFSSDQKEKSKSPAKEVPSGGDSKSQGDTKSQSDAKS SGQSQGQSKDSGKSSSDSSKSHSVIGAVKDVVAGAKDVAGKAVEDAPSIMHTAVDAVKNA ATTVKDVASSAASTVAEKVVDAYHSVVGDKTDDKKEGEHSGDKKDDSKAGSGSGQGGDNK KSEGETSGQAESSSGNEGAAPAKGRGRGRPPAAAKGVAKGAAKGAAASKGAKSGAESSKG GEQSSGDIEMADASSKGGSDQRDSAATVGEGGASGSEGGAKKGRGRGAGKKADAGDTSAE PPRRSSRLTSSGTGAGSAPAAAKGGAKRAASSSSTPSNAKKQATGGAGKAAATKATAAKS AASKAPQNGAGAKKKGGKAGGRKRK
DNA sequence
>RvY_17224.t1 Damage Suppressor (Dsup)|S261 [ZN09419 ZM11418.1] ATGGCATCCACACACCAATCATCCACAGAACCCTCTTCCACAGGTAAATCTGAGGAAACG AAGAAAGATGCTTCGCAAGGGAGCGGGCAAGACTCCAAGAACGTAACCGTTACCAAAGGT ACCGGTTCCTCCGCCACCTCAGCTGCCATTGTCAAGACAGGAGGATCCCAAGGCAAAGAT TCCTCTACTACAGCGGGCTCTTCTAGTACTCAGGGACAGAAGTTCAGTACTACACCTACC GACCCGAAAACTTTCAGCTCTGACCAAAAGGAGAAATCCAAAAGCCCAGCCAAAGAAGTC CCGTCTGGTGGCGATAGTAAGTCCCAAGGTGACACCAAGTCTCAAAGCGACGCCAAATCT TCTGGACAAAGTCAGGGCCAGTCTAAAGACAGCGGCAAATCATCTTCCGACAGTAGCAAG AGTCACTCTGTCATCGGAGCTGTCAAAGACGTCGTTGCAGGCGCCAAAGATGTCGCAGGA AAAGCCGTCGAGGATGCTCCTAGCATCATGCATACTGCAGTCGATGCTGTGAAGAACGCA GCCACGACTGTGAAGGATGTGGCATCGTCGGCTGCATCGACTGTGGCGGAGAAGGTAGTC GATGCTTACCACAGTGTGGTGGGAGACAAGACGGACGACAAGAAAGAGGGCGAGCACAGC GGCGACAAGAAGGACGACTCCAAAGCTGGAAGTGGCTCTGGACAAGGTGGTGACAACAAG AAGTCTGAAGGAGAGACTTCTGGCCAAGCAGAATCCAGCTCTGGCAACGAAGGAGCTGCT CCAGCCAAAGGCCGTGGTCGTGGACGGCCTCCAGCAGCTGCTAAAGGAGTTGCTAAGGGT GCTGCAAAGGGCGCTGCCGCCTCCAAAGGAGCCAAGAGCGGTGCTGAATCCTCCAAGGGA GGAGAACAGTCGTCAGGAGATATCGAGATGGCAGATGCTTCCTCCAAGGGAGGCTCGGAC CAGAGGGATTCCGCGGCGACCGTTGGCGAAGGTGGTGCATCAGGCAGTGAGGGTGGAGCT AAGAAAGGCAGAGGGCGGGGCGCTGGTAAGAAAGCGGATGCGGGTGATACGTCCGCTGAG CCGCCTCGGCGGTCGTCCCGCCTGACGTCTTCAGGTACAGGGGCGGGTTCCGCTCCAGCT GCAGCGAAAGGCGGAGCGAAGCGTGCTGCTTCTTCCTCCAGTACACCTTCCAACGCTAAG AAGCAAGCGACTGGAGGTGCTGGCAAAGCTGCTGCCACCAAAGCAACTGCTGCCAAATCG GCAGCCTCTAAAGCTCCCCAGAATGGCGCAGGTGCCAAGAAGAAGGGAGGAAAGGCTGGA GGACGGAAGAGGAAGTAA
Raw data
- Genome DRA001119
- RNA-seq DRA001120
- Fosmid ends FT955276 .. FT997721 (42446 entries)
- Fosmid clones AP013349 .. AP013352 (4 entries)
- EST HY377478 .. HY448296 (70819 entries)
Genome database
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